programmable-biology
(3)
Daehwan Kim
Daehwan Kim is a computational biologist and software engineer whose genome-alignment tools - TopHat, HISAT and HISAT2 - are cited more than 78,000 times and are used by researchers worldwide to read DNA and RNA data. A former Michael L. Rosenberg Assistant Professor in the Lyda Hill Department of Bioinformatics at UT Southwestern Medical Center, he co-founded Omphalos Lifesciences, where he invented L++, a high-level programming language meant to describe living systems the way C++ describes machines. His goal is a fully programmable, simulatable virtual cell.
Omphalos Lifesciences Inc
Omphalos Lifesciences is a Dallas-based biotech software company building a programmable virtual cell platform. Founded by computational biologist Daehwan Kim - creator of the widely used HISAT and TopHat sequencing tools - the company created L++, a high-level programming language that lets biologists describe, simulate, and visualize living systems the way software engineers write code. Its Life Designer platform aims to accelerate drug discovery, precision medicine, and biomanufacturing by running experiments in silico before they hit the lab bench.
Profluent
Profluent is an AI-first protein design company building frontier models that author novel proteins - including the first AI-designed CRISPR gene editor, OpenCRISPR-1. Based in Berkeley's biotech corridor, the company applies the same scaling-law playbook that worked for language models to the language of biology, then validates the outputs in a wet lab.