The company that feeds carbon dioxide to microbes and gets chocolate, oil and jet fuel back out.
Here is a thing about carbon dioxide that is easy to forget: it is a molecule, and molecules are useful. The whole climate industry has spent a decade trying to make CO2 disappear - pump it underground, mineralize it, pay someone to not emit it. Circe Bioscience, a Boston company that spun out of Harvard's Wyss Institute in 2021, looked at the same molecule and drew a different conclusion. If CO2 is carbon and oxygen, and carbon and oxygen are what most useful things are made of, then the emission is not a waste product. It is inventory.
The mechanism is gas fermentation, which sounds exotic but is roughly what plants have been doing since before there were people to burn things. Circe engineers microbes - the metabolic wiring inside them - so that instead of eating sugar, they eat gas. Feed them carbon dioxide, water and electricity, and they build triglycerides, the precursor molecules of fats and oils. They can also be tuned to make sugars, biodegradable plastics and fuels. The inputs are three items long. The outputs are, in principle, most of the chemicals industry.
The number that makes this interesting rather than merely clever is 3:1. For every kilogram of oil the process produces, it consumes about three kilograms of CO2. This is the part worth pausing on. Plenty of companies sell "sustainable" versions of things that are marginally less bad than the incumbent. Circe's arithmetic runs the other direction - the more product it makes, the more carbon it pulls out of the air. Carbon-negative is not a slogan bolted onto a marketing deck here; it is the stoichiometry of the reaction.
Circe was conceived by Shannon Nangle and Marika Ziesack in the lab of Wyss faculty member Pamela Silver, and it carries the intellectual DNA of an academic project that decided to become a business. That transition is where most deep-tech science quietly dies - the gap between a result in a paper and a molecule someone will pay for is wide and full of expensive equipment. Circe crossed a meaningful chunk of it in three years, taking a worldwide exclusive license to the technology in 2024 and, by late that year, standing up a pilot plant.
The proof-of-concept that got everyone's attention was, of all things, a chocolate bar. Cocoa butter is the fat that gives chocolate its snap and its melt, and it comes from cacao trees, which grow in a narrow tropical band under increasing climate stress and with a supply chain that has its own troubles. Circe's microbes make a cocoa butter that is molecularly identical to the tree-grown version - same molecule, no tree, no deforestation. The company used it to make what it calls the world's first chocolate produced with fermentation-derived cocoa butter, or, as the press cheerfully put it, chocolate made out of thin air.
This is a good demonstration for a reason that goes beyond novelty. If you can make cocoa butter, you have shown that the platform hits a specific, high-value, molecularly precise target - not a vague "bio-oil" but the exact fat a confectioner needs. That precision is the whole thesis. Circe is not selling one product; it is selling a process that is, in its own description, industry-agnostic, having produced prototypes spanning confectionery, dairy ingredients, sugars, proteins, polymers and biofuels.
Whether that breadth is a strength or a temptation is the open question every platform biotech faces. Doing one molecule extremely well is a business. Doing twelve molecules adequately is a research program. Circe's answer, sensibly, has been to start with fats and oils - high value, clear buyers in food and cosmetics - and let the platform's range be a promise for later rather than a distraction now.
The process is short enough to fit on four cards, which is either reassuring or slightly alarming depending on your relationship with industrial microbiology.
Start with CO2 - from point-source emissions or the air - plus water and renewable electricity.
→Engineered microbes consume the gas the way plants do, running on electricity instead of sunlight.
→Their re-wired metabolism assembles target molecules - triglycerides, sugars, polymers, fuels.
→Circe collects the molecules - drop-in ingredients that are carbon-negative by construction.
Net result: more product made means more carbon removed. The output is the point; the drawdown is a feature of the chemistry, not an offset bought afterward.
Circe's pitch is that the same fermentation process, pointed at different targets, can make a surprising range of the things modern industry runs on.
Engineered microbes convert CO2, water and electricity into complex molecules - the core engine everything else is built on.
Triglycerides and specialty fats for food, cosmetics and biofuels, made at roughly 3 kg CO2 consumed per kg produced.
Molecularly identical to tree-grown cocoa butter - the basis of Circe's "world's first" gas-fermentation chocolate.
Demonstrated across confectionery, dairy ingredients, sugars, proteins, biodegradable polymers and biofuels.
Trained in synthetic biology at Harvard's Wyss Institute, Nangle helped engineer the microbes at the heart of Circe. She has been named a 2021 Activate Fellow and an MIT Technology Review "Innovator Under 35."
A Wyss Institute researcher who worked alongside Nangle in Pamela Silver's lab to re-wire microbial metabolism so it would consume greenhouse gases. Also a 2021 Activate Fellow and Wyss Lumineer.
Microbes are wonderful living machines that we can leverage to produce the things we need for everyone to live a happy, comfortable life while reducing pollution, land use, and fossil fuel consumption.— Pamela Silver, Wyss Institute faculty, whose lab birthed the technology
A $5M seed round in September 2024 came alongside non-dilutive government funding - a useful signal, since climate VCs and a US Department of Energy program rarely agree on much.
| Round | Amount | Date | Backers |
|---|---|---|---|
| Seed | $5M | Sep 2024 | ReGen Ventures, Undeterred Capital, Ponderosa Ventures, Bee Partners, Exceptional Ventures, Climate Capital, Safar Partners |
| ARPA-E (ECOSynBio) | ~$3.2M | 2021–22 | US Department of Energy (non-dilutive) |
The seed money is doing one specific job: moving the process out of the lab and into a pilot plant in Waltham, Massachusetts - described as the most advanced aerobic gas fermentation facility of its kind.
Buy cocoa butter and specialty fats that are molecularly identical to the originals but decoupled from tropical agriculture and its climate exposure.
Replace petroleum- or palm-derived oils with carbon-negative equivalents that behave the same on the shelf and in the formula.
The stuff inside plastics, lubricants and fuels is a huge, quiet source of emissions. Circe's platform aims to rebuild that feedstock from captured carbon.
Point-source CO2 that today is a cost and a compliance headache becomes the raw material for something you can sell.
Circe (Circe Bioscience) is a Boston-based climate biotech company that engineers microbes to eat carbon dioxide and build valuable molecules - fats, oils, sugars, plastics and fuels - using only CO2, water and electricity. Spun out of Harvard's Wyss Institute in 2021, its gas-fermentation platform consumes roughly 3 kilograms of CO2 for every kilogram of oil it produces, making the process carbon-negative. The company has made the world's first chocolate using fermentation-derived cocoa butter and, in September 2024, raised a $5M seed round to open a pilot plant in Waltham, Massachusetts.
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